miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|22254490|gb|BQ868733.1|BQ868733 GGGGGGAGAAAATGCAGTAGAAATGAATAGTGACAATCACGACGGCAGCCCCCACAATCACCATTCGCAACCTCATCAGC
AGCGCCGCCCACGAGGCTTCGCTGCGGCAGCGATGGGCATCTCCACCATTACCACAACGATCAACACCAGTCCTAGGGGC
GGTAGGAATGAGAGAGAGAAAGAGAAAGAACGAACCAAGCTTCGAGAACGCCACCGCCGTGCCATCACTAGTCGTATGCT
AGCCGGTCTCCGACAATACGGCAACTTCCCTCTACCGGCACGCGCAGACATGAACGACGTACTCGCCGCCCTTGCCCGCG
AAGCTGGGTGGACCGTCGAGGCCGATGGCACTACATTTCGCCAATCTACACCGTCTTCTAAATTGGGTGTGTATCCAGGA
AGGTCAGTAGAAAGTCCAGTATCCAGTAGTTCTTTGAAAAGTTATTCAGTGAAAACATCACTCGATTTTCCATCATCAGT
TCTCAGAATCGATGAGAGCCCATCACCTGCTTCTCTTGATTCTGTTGTGGTCCCAGGAATAGGTACCACAGAATGTGAAA
AATACAGTACCAGCCCTATCAATTCACACGATTGTTTGGAGACTGATCAGCTTATTCAAGAAGGCCAGATAGTGGACCAA
GGGTTAAACTTTTTAGGCACTGCATATGTTCCTGTTTATGTGATGCTTGGAACTGG




Most similar to sp|Q9FH80|BAM8_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O24381|TLC1_SOLTU Plastidic ATP/ADP-transporter OS=Solanum
           tuberosum PE=2 SV=2
          Length = 631

 Score =  140 bits (353), Expect(2) = 2e-47
 Identities = 81/138 (58%), Positives = 90/138 (65%), Gaps = 6/138 (4%)
 Frame = +1

Query: 295 MDAVLQTRGLLSLPLNPKIRSLQA--SNGLKQRF---LAAKPRTLDGFSLSSNGVSKFQS 459
           M+ VLQTRGLLSLP  PKI++       GL+ RF    + KP  L+G SLSSNG  K Q 
Sbjct: 1   MEGVLQTRGLLSLPSKPKIKAFYPLPQGGLRNRFNSLSSLKPNPLNGVSLSSNGFQKVQG 60

Query: 460 FVSKPQGFVPKERPLLICKXXXXXXXXX-DGQPLLGEAEKPKFFGIEYTTFKKIIPLGLM 636
           F +KPQ F  K+R   ICK          DGQPL  E E+PKF GIE  T KKIIPLG M
Sbjct: 61  FDTKPQLFGQKKRCFPICKAEAAAAAGAADGQPLFVEKEQPKFMGIELVTLKKIIPLGAM 120

Query: 637 FFCILFNYTILRDTKDVL 690
           FFCILFNYTILRDTKDVL
Sbjct: 121 FFCILFNYTILRDTKDVL 138



 Score = 70.5 bits (171), Expect(2) = 2e-47
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +2

Query: 689 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK 790
           LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK
Sbjct: 138 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK 171


>sp|Q39002|TLC1_ARATH ADP,ATP carrier protein 1, chloroplastic
           OS=Arabidopsis thaliana GN=AATP1 PE=1 SV=2
          Length = 624

 Score =  127 bits (320), Expect(2) = 1e-43
 Identities = 83/143 (58%), Positives = 91/143 (63%), Gaps = 11/143 (7%)
 Frame = +1

Query: 295 MDAVLQTRGLLSLPLNP-KIRS-LQASNGLKQRFLAAKPRTLDGFSLSSNGVSKFQSFVS 468
           M+AV+QTRGLLSLP  P  +RS LQ S+GLKQR  AAKPR L G SLS NG  KFQ+F  
Sbjct: 1   MEAVIQTRGLLSLPTKPIGVRSQLQPSHGLKQRLFAAKPRNLHGLSLSFNGHKKFQTFEP 60

Query: 469 KPQGFV--PKERPL-LICKXXXXXXXXXDGQPLLGEAEK------PKFFGIEYTTFKKII 621
              G     KER    ICK         DG  + GE +       PK FG+E  T KKII
Sbjct: 61  TLHGISISHKERSTEFICKAEAAAAG--DGA-VFGEGDSAAVVASPKIFGVEVATLKKII 117

Query: 622 PLGLMFFCILFNYTILRDTKDVL 690
           PLGLMFFCILFNYTILRDTKDVL
Sbjct: 118 PLGLMFFCILFNYTILRDTKDVL 140



 Score = 70.5 bits (171), Expect(2) = 1e-43
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +2

Query: 689 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK 790
           LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK
Sbjct: 140 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK 173


>sp|P92935|TLC2_ARATH ADP,ATP carrier protein 2, chloroplastic
           OS=Arabidopsis thaliana GN=AATP2 PE=1 SV=2
          Length = 618

 Score =  112 bits (281), Expect(2) = 4e-39
 Identities = 73/140 (52%), Positives = 81/140 (57%), Gaps = 8/140 (5%)
 Frame = +1

Query: 295 MDAVLQTRGLLSLPLNP--KIRSLQASNGLKQRFLAAKPRTLDGFSLSSNGVSKFQSFVS 468
           M+ ++QTRG+LSLP  P    R LQ S+GLKQR        L   SLSSNG  KFQ+F  
Sbjct: 1   MEGLIQTRGILSLPAKPIGVRRLLQPSHGLKQRLFTTN---LPALSLSSNGHKKFQAFQQ 57

Query: 469 KPQGFVP--KERPL-LICKXXXXXXXXX---DGQPLLGEAEKPKFFGIEYTTFKKIIPLG 630
            P G     KER    ICK            D       A  PK FG+E TT KKI+PLG
Sbjct: 58  IPLGISVSHKERSRGFICKAEAAAAGGGNVFDEGDTAAMAVSPKIFGVEVTTLKKIVPLG 117

Query: 631 LMFFCILFNYTILRDTKDVL 690
           LMFFCILFNYTILRDTKDVL
Sbjct: 118 LMFFCILFNYTILRDTKDVL 137



 Score = 70.5 bits (171), Expect(2) = 4e-39
 Identities = 34/34 (100%), Positives = 34/34 (100%)
 Frame = +2

Query: 689 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK 790
           LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK
Sbjct: 137 LVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTK 170


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FH80|BAM8_ARATH Beta-amylase 8 OS=Arabidopsis thaliana GN=BAM8
           PE=2 SV=1
          Length = 689

 Score =  137 bits (346), Expect = 5e-32
 Identities = 83/161 (51%), Positives = 97/161 (60%), Gaps = 5/161 (3%)
 Frame = +2

Query: 221 AITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTFRQSTPSSKLGVYPG 400
           AITSRMLAGLRQYGNFPLPARADMNDV+AALAREAGW+VEADGTT+RQS   + +  +P 
Sbjct: 105 AITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVEADGTTYRQSQQPNHVVQFPT 164

Query: 401 RXXXXXXXXXXXXXXXXXXXLDFPSSVLRIDESPSPASLDSVVV-----PGIGTTECEKY 565
           R                        SVLR DE  +P SLDS+ +     PG G       
Sbjct: 165 RSIESPLSSSTLKNCAKAAIESQQHSVLRNDEKLAPVSLDSIGIAESDHPGNG----RYT 220

Query: 566 STSPINSHDCLETDQLIQEGQIVDQGLNFLGTAYVPVYVML 688
           S SPI S  CLE +QLIQ+    +Q  +F  + YVPVY ML
Sbjct: 221 SVSPITSVGCLEANQLIQDVHSAEQCNDFTESFYVPVYAML 261